Welcome to Metabiome’s documentation!¶
Metabiome is a pipeline designed to make easier the study and analysis of microbial communities from metagenomic sequence data. Metabiome incorporates high quality software tools that perform main steps in metagenomic analysis:
Preprocessing of reads
Taxonomic profiling
Taxonomic binning
Functional profiling
16S extraction
Genome assembly
Genome binning
Bin refinement
Why this is important?¶
The pipeline allows you to profile the community from a taxonomic and functional approach based on assembled or non-assembled sequences. It also includes a 16S gene extraction step that gives the possibility to carry out comparative analyzes, in relation to abundance, between the bacterial composition of a sample analyzed from different approaches.
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