Get started

Contents

• Get started

  • Requirements

    • Installing Miniconda

  • Installing Metabiome

Requirements

Metabiome runs in Linux systems and requires the Conda environment manager to manage the software packages it uses.

Installing Miniconda

The simplest way to get Conda is by installing Miniconda. In order to install Miniconda please follow the Miniconda instructions and be sure to execute conda init at the end of the installation process.

Installing Metabiome

In order to install, clone Metabiome into your machine and execute install.sh by running the following commands:

git clone -b master https://github.com/Nesper94/metabiome.git
cd metabiome/
bash install.sh

You can also download Metabiome directly from the Github page.

The installation script will create Conda environments with all the software you can use with Metabiome.

For a more complete reference see the user manual.